matsuken92 / molecular

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yiemon feature取り込み #9

Open matsuken92 opened 5 years ago

matsuken92 commented 5 years ago

良さげな特徴

add_atm_rad.pkl
add_atom_counts.pkl
calc_nn_distance.pkl
openbabel.pkl
add_mullinken_charges.pkl
atm_d_summary.pkl
cood_stats2.pkl
scp -i ~/key/google_compute_engine -r 10.138.0.18:/home/kenichi.matsui/work/molecular/processed/yiemon/train ./
scp -i ~/key/google_compute_engine -r 10.138.0.18:/home/kenichi.matsui/work/molecular/processed/yiemon/test ./
matsuken92 commented 5 years ago

重複feature調査 with corr

dist d_diff_0_all_comb_min 0.9993822753510513
dist d_inM_atm0_max_diff 0.9476561797138304
dist d_inM_atm0_mean_diff 0.9754776214065121
dist d_inM_atm0_mean_ratio 0.973156699702076
dist d_inM_atm0_min_diff 0.9852050588251696
dist d_ratio_0_all_comb_mean 0.9406299528622557
dist d_ratio_0_all_comb_min 0.9961665478076627
dist inM_d_max_diff 0.9911651086041123
dist inM_d_mean_diff 0.9912348988339141
dist inM_d_mean_ratio 0.9903694068220982
dist inM_d_min_diff 0.9989907978080412
dist inM_type_atm_d_max 0.953263797883882
dist inM_type_atm_d_mean 0.9618009391540239
dist inM_type_atm_d_min 0.9419586093524788
abs_dist d_diff_0_all_comb_min 0.9436447854543629
abs_dist d_inM_atm0_mean_diff 0.919261881564001
abs_dist d_inM_atm0_mean_ratio 0.9170993903473428
abs_dist d_inM_atm0_min_diff 0.9307011379978205
abs_dist d_ratio_0_all_comb_min 0.9399435493461143
abs_dist inM_d_max_diff 0.9343867536537247
abs_dist inM_d_mean_diff 0.93524460633921
abs_dist inM_d_mean_ratio 0.9343515816969037
abs_dist inM_d_min_diff 0.9431553987952291
abs_dist inM_type_atm_d_mean 0.9049222727327548
C C_num 1.0
F F_num 1.0
F F_ratio_all 0.9875666594323242
H H_num 1.0
H H_ratio_all 0.9596416534256992
H atm_d_count 0.9075890889480576
H inM_atm_d_count 0.9075890889480576
H total_atm_num 0.9867564648029599
N N_num 1.0
N N_ratio_all 0.9812487527459984
O O_num 1.0
O O_ratio_all 0.9686773250351782
molecule_couples H_num 0.9075890889480576
molecule_couples atm_d_count 1.0
molecule_couples inM_atm_d_count 1.0
molecule_dist_mean atm_d_mean 1.0
molecule_dist_mean inM_atm_d_mean 1.0
molecule_dist_min atm_d_min 1.0
molecule_dist_min inM_atm_d_min 1.0
molecule_dist_max atm_d_max 1.0
molecule_dist_max inM_atm_d_max 1.0
atom_0_couples_count inM_atm0_atm_d_count 1.0
atom_1_couples_count inM_atm1_atm_d_count 1.0
molecule_atom_index_0_dist_mean inM_atm0_atm_d_mean 1.0
molecule_atom_index_0_dist_max inM_atm0_atm_d_max 1.0
molecule_atom_index_0_dist_min inM_atm0_atm_d_min 1.0
molecule_atom_index_0_dist_min nn__O 0.9896705043367784
molecule_atom_index_0_dist_std inM_atm0_atm_d_var 0.9866380990477568
molecule_atom_index_1_dist_mean inM_atm1_atm_d_mean 1.0
molecule_atom_index_1_dist_max inM_atm1_atm_d_max 1.0
molecule_atom_index_1_dist_min inM_atm1_atm_d_min 1.0
molecule_atom_index_1_dist_std inM_atm1_atm_d_var 0.9521764141988912
molecule_type_0_dist_std inM_type_atm_d_max 0.9350038485880532
molecule_type_0_dist_std inM_type_atm_d_mean 0.932491356901349
molecule_type_0_dist_std inM_type_atm_d_min 0.9108523759436667
molecule_type_dist_mean d_diff_0_all_comb_min 0.9624477178740599
molecule_type_dist_mean d_inM_atm0_max_diff 0.9257302085906026
molecule_type_dist_mean d_inM_atm0_mean_diff 0.9401432610666435
molecule_type_dist_mean d_inM_atm0_mean_ratio 0.9402919724123426
molecule_type_dist_mean d_inM_atm0_min_diff 0.9396038575925736
molecule_type_dist_mean d_ratio_0_all_comb_mean 0.9153531916436729
molecule_type_dist_mean d_ratio_0_all_comb_min 0.9610411152189846
molecule_type_dist_mean inM_d_max_diff 0.9527930125964522
molecule_type_dist_mean inM_d_mean_diff 0.9519987477285533
molecule_type_dist_mean inM_d_mean_ratio 0.951164672474275
molecule_type_dist_mean inM_d_min_diff 0.9607468385537937
molecule_type_dist_mean inM_type_atm_d_max 0.9911237960760304
molecule_type_dist_mean inM_type_atm_d_mean 1.0
molecule_type_dist_mean inM_type_atm_d_min 0.9793696086229287
molecule_type_dist_max d_diff_0_all_comb_min 0.9538735756590867
molecule_type_dist_max d_inM_atm0_max_diff 0.9184621528268953
molecule_type_dist_max d_inM_atm0_mean_diff 0.9334685105704806
molecule_type_dist_max d_inM_atm0_mean_ratio 0.9340406186566088
molecule_type_dist_max d_inM_atm0_min_diff 0.9303275559670215
molecule_type_dist_max d_ratio_0_all_comb_mean 0.9052608521702835
molecule_type_dist_max d_ratio_0_all_comb_min 0.9524256147574441
molecule_type_dist_max inM_d_max_diff 0.9406105636136329
molecule_type_dist_max inM_d_mean_diff 0.9453927497365362
molecule_type_dist_max inM_d_mean_ratio 0.9449937671851576
molecule_type_dist_max inM_d_min_diff 0.9519989847985357
molecule_type_dist_max inM_type_atm_d_max 1.0
molecule_type_dist_max inM_type_atm_d_mean 0.9911237960760301
molecule_type_dist_max inM_type_atm_d_min 0.9577669283315235
molecule_type_dist_min d_diff_0_all_comb_min 0.9419472838122104
molecule_type_dist_min d_inM_atm0_max_diff 0.9090649695923974
molecule_type_dist_min d_inM_atm0_mean_diff 0.9238175446151136
molecule_type_dist_min d_inM_atm0_mean_ratio 0.924727859089181
molecule_type_dist_min d_inM_atm0_min_diff 0.9233694703305686
molecule_type_dist_min d_ratio_0_all_comb_min 0.939679285234197
molecule_type_dist_min inM_d_max_diff 0.9356281007518841
molecule_type_dist_min inM_d_mean_diff 0.9351725837072832
molecule_type_dist_min inM_d_mean_ratio 0.9352263338808142
molecule_type_dist_min inM_d_min_diff 0.9407487445073078
molecule_type_dist_min inM_type_atm_d_max 0.9577669283315235
molecule_type_dist_min inM_type_atm_d_mean 0.9793696086229287
molecule_type_dist_min inM_type_atm_d_min 1.0
molecule_type_dist_std inM_type_atm_d_max 0.9118421460788483
molecule_type_dist_std inM_type_atm_d_var 0.9722112303887702
f006:mass_1 rad_1 0.9897149196513235
a1_degree rad_1 0.9104265586132508
a1_hybridization rad_1 0.9283459114295506
dist_to_type_mean d_inM_type_mean_diff 0.935868659815873
dist_to_type_mean d_inM_type_mean_ratio 0.9390203402691859
dist_C_0_x atm_dist_min_all_0 0.9224318300651615
dist_C_0_x atm_dist_min_all_of_nn 0.9267702589169932
dist_C_0_x nn__C 0.9972183231666036
dist_N_0_x nn__N 0.9256044235603726
EN_x EN_0 1.0
EN_x rad_0 0.9999999999949752
rad_x EN_0 0.9999999999949752
rad_x rad_0 1.0
bond_lengths_mean_x atm_dist_min_all_0 0.9999999999991216
bond_lengths_mean_x atm_dist_min_all_of_nn 0.9973688193703143
bond_lengths_mean_x nn__C 0.943534449048605
EN_y EN_1 1.0
rad_y rad_1 1.0
n_bonds_y rad_1 0.9103462805091307