search

mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
26 stars 15 forks source link

convertGenbankToTable needs to check for taxID consistency in concatinated genbank file #35

Open mattb112885 opened 11 years ago

mattb112885 commented 11 years ago

Since we are dependent on the taxIDs in the genbank file all being the same but we dont actually ever check this, we should check it. I should also put this in as part of the consistency checking script...

Yes, NCBI managed to go to a new low and put things with two different tax IDs under the same strain (C. tetani) - one of them was a virus. SIGH.

mattb112885 commented 11 years ago

Oops its Clostridium perfringens SM101 not C. tetani...