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mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
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Make BLAST E-value cutoff a parameter to main.sh #42

Closed mattb112885 closed 11 years ago

mattb112885 commented 11 years ago

Right now the E-value cutoff is 1E-5. It's been fine for our purposes but people might want to go lower than that... we can just make it an optional parameter in the script.

mattb112885 commented 11 years ago

Fixed, tested, works, committed. These E-values are now options in the main.sh script. The defaults are identical to what they were before (1E-5 for BLASTP and 1.0 for BLASTN).