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mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
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env variable for FastTree_wrapper.py to set number of cores #46

Closed JamesRH closed 11 years ago

JamesRH commented 11 years ago

Have a user option to set the number of threads used by FastTree.

The number of threads for FastTreeMP used is determined by the environmental variable OMP_NUM_THREADS

ncoers=10 env = os.environ.copy() env['OMP_NUM_THREADS'] =str(ncores)

mattb112885 commented 11 years ago

Fixed.