Global bootstrapping defaults for FastTree_wrapper.py

mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes

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Closed JamesRH closed 11 years ago

JamesRH commented 11 years ago

For global bootstrapping (-g), use the -intree1 option to speed up runs. http://www.microbesonline.org/fasttree/#Support

mattb112885 commented 11 years ago

Unfortunately for our small numbers of sequences this isn't really any faster but I went ahead and implemented it anyway.