If a user uses convertGenbank2Table.py with a version number (-v) different from the one already inside a genbank file from the PubSEED, the raw file will ignore it and create a raw file whose name does not match the names of the genes inside it.
We need to change this. My suggestion is to ignore -v with a warning if PubSEED identifiers are found and to use those IDs as a basis for naming the file.
If a user uses convertGenbank2Table.py with a version number (-v) different from the one already inside a genbank file from the PubSEED, the raw file will ignore it and create a raw file whose name does not match the names of the genes inside it.
We need to change this. My suggestion is to ignore -v with a warning if PubSEED identifiers are found and to use those IDs as a basis for naming the file.