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mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
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Error with the creation of CDD database #65

Closed Greg568 closed 8 years ago

Greg568 commented 10 years ago

Hi,

I've got the last version of the VM file 64 bits. when using setup_step4.sh, I had an error which is caused by the makeprofiledb command

makeprofiledb -in Cdd.pn -dbtype rps -scale 1.0 Error: (CSerialException::eEOF) line 3446: NCBI C++ Exception: "/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file Error: (CSerialException::eEOF) error while reading freqRatios ( at PssmWithParameters.pssm.intermediateData.freqRatios[]) Error: (106.16) Application's execution failed(CSerialException::eEOF) line 3446: NCBI C++ Exception: "/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file

Any ideas ?

Thanks

Greg

mattb112885 commented 10 years ago

Im not sure what happened here, maybe the download failed or was corrupted, or maybe rpsblast needs to be updated (if ncbi changed something). Could you try deleting the cdd files and rerunning setup step4?