I've got the last version of the VM file 64 bits.
when using setup_step4.sh, I had an error which is caused by the makeprofiledb command
makeprofiledb -in Cdd.pn -dbtype rps -scale 1.0
Error: (CSerialException::eEOF) line 3446: NCBI C++ Exception:
"/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file
Error: (CSerialException::eEOF) error while reading freqRatios ( at PssmWithParameters.pssm.intermediateData.freqRatios[])
Error: (106.16) Application's execution failed(CSerialException::eEOF) line 3446: NCBI C++ Exception:
"/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file
Im not sure what happened here, maybe the download failed or was corrupted, or maybe rpsblast needs to be updated (if ncbi changed something). Could you try deleting the cdd files and rerunning setup step4?
Hi,
I've got the last version of the VM file 64 bits. when using setup_step4.sh, I had an error which is caused by the makeprofiledb command
makeprofiledb -in Cdd.pn -dbtype rps -scale 1.0 Error: (CSerialException::eEOF) line 3446: NCBI C++ Exception: "/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file Error: (CSerialException::eEOF) error while reading freqRatios ( at PssmWithParameters.pssm.intermediateData.freqRatios[]) Error: (106.16) Application's execution failed(CSerialException::eEOF) line 3446: NCBI C++ Exception: "/home/itep/ncbi-blast-2.2.28+-src/c++/src/util/strbuffer.cpp", line 394: Error: ncbi::CIStreamBuffer::FillBuffer() - end of file
Any ideas ?
Thanks
Greg