Closed qu4drupole closed 8 years ago
First can you run a git update to make sure you have the latest version of ITEP? (many bugs have been fixed since publication) Do so with the following:
$ git pull origin master
Second, if that doesn't help I will need to see the output to diagnose the problem. Can you do the following:
Thanks
Can you also tell me if anything showed up in any of the other folders (raw/, db/, blastres/, etc.) and if so what is in there? That will also be useful to see where it failed...
Thanks
As I understand it, setup_step1.sh should put all the paired BLAST results in "blastn_res" (I uploaded genomes I got from pubSEED). After running the setup script, I don't see anything in the results directory. I installed ITEP on a computer cluster at my university, so it's possible I screwed up installing one or more of the dependencies. I would really appreciate some help interpreting and using your software. The output running the script is quite long. I can't copy it all. Please let me know of anything I can do to help diagnosis this problem.