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mattb112885 / clusterDbAnalysis

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
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Error in ./convertGenbank2table.py #69

Closed meileel closed 8 years ago

meileel commented 8 years ago

Hi Matt, I have the following error keep popping up when I need to convert the genebank file

itep@itep-VirtualBox:~/LATEST_ITEP/master$ ./convertGenbank2table.py -g ReferenceGenome/ITEPref/psyringaeB301D.gbk -v 1 Traceback (most recent call last): File "./convertGenbank2table.py", line 285, in if float(Bio.version) < RECOMMENDED_BIOPYTHON_VERSION: ValueError: invalid literal for float(): 1.62b itep@itep-VirtualBox:~/LATEST_ITEP/master$

Please let me know how to solve the error. Thanks Meilee

JosephRyanPeterson commented 8 years ago

Hi Meilee,

Which version of itep did you download? The newest version in trunk doesn't have that line.

Sincerely, Joseph

meileel commented 8 years ago

Hi Joseph, I have the 64bit version1.1. Is this is the newest version ? So where can I get the newest version if this is not the one? Thanks a lot. Best, Meilee

JosephRyanPeterson commented 8 years ago

Is this the virtual machine from this website: https://price.systemsbiology.org/research/itep/ ?

meileel commented 8 years ago

Yes, this is the one from the website.

JosephRyanPeterson commented 8 years ago

You may try downloading the source version from github here. Otherwise you could try installing a different version of Biopython (e.g. one that isn't beta; the 1.62b indicates that there is a beta version installed).

meileel commented 8 years ago

Problems solved. Thanks!!