Closed mbeasier closed 5 years ago
mattb112885
commented
5 years ago Some previous people who had this issue said it was fixed with a newer version of sqlite. https://github.com/mattb112885/clusterDbAnalysis/issues/76
It is also possible that if you have multiple partitions, the partition with your /tmp/ directory is filling up (sqlite needs to use this folder for staging).
mbeasier
commented
5 years ago Some previous people who had this issue said it was fixed with a newer version of sqlite. #76
It is also possible that if you have multiple partitions, the partition with your /tmp/ directory is filling up (sqlite needs to use this folder for staging).
I have solved this problem by following the Known issues in Wiki.But I got another problem when I used the python file db_findClustersByOrganismList.py in /src, it reported the error that ImportError: cannot import name TextFace.This error is located in CoreGeneFuncations.py in /lib, source from the code "from ete2 import TextFace".And I have already installed the necessary dependencies that the tutorial asked.I would be appreciated if you can help me with this problem, thanks.
mattb112885
commented
5 years ago I haven't seen this issue before. It could be a problem with dependencies of ETE itself:
https://github.com/etetoolkit/ete/issues/195
To be honest: You might want to take a look at Anvio (https://github.com/merenlab/anvio/tree/master/bin), ITEP isn't being updated any more, and that tool seems to do what ITEP does, but better.
Matt
mbeasier
commented
5 years ago Thanks for your replies.I have solved my problems with your help.
I encountered a problem when I tried to build the database with setup_step1.sh.The error message said that database or disk is full.But my disk isn't full, the problem must came from database and I don't know what was it. Would anyone can help me with this problem?