search

matted-zz / multipool

High-resolution genetic mapping for pooled sequencing.
http://cgs.csail.mit.edu/multipool/
MIT License
9 stars 12 forks source link

Allow for offset bin positions #7

Closed tw164 closed 8 years ago

tw164 commented 8 years ago

This permits splitting of input count data files while preserving the original (0-offset) chromosome coordinates in Multipool output.

Change function load_table to set a numpy array of integer bin start positions (in base pairs) from the range of observed locus positions, and include these in its return value.

Change function doLoading to accept bin start positions from each call to load_table, pad data to have a consistent bin range for all input tables, and include bin start positions in its return value.

Change function doOutput to accept bin start positions as a parameter, and print the start position of the given bin on the first column of each line.

Change function doPlotting to accept bin start positions as a parameter, and set horizontal plot axes from these.

matted-zz commented 8 years ago

Looks great, thanks!

tw164 commented 8 years ago

No worries, thanks for accepting it. :-)