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matteocereda / RNAmotifs

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
http://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-1-r20
MIT License
9 stars 2 forks source link

Issues installing geco++ #2

Open dbogdano opened 1 year ago

dbogdano commented 1 year ago

Hello,

I'm running into some issues installing GeCo++. Running make on the downloaded source code gives the following errors: 

/c4/home/derek/bin/geco++-0.1.464/geco/geco_base.h:347:63: error: ‘memset’ was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
         if ( value==0 ) memset ( i_mem,0,sizeof ( T ) *length );

Let me know if I can provide more information. I'm very much looking forward to running RNAmotifs on my data.

Thanks, Derek

matteocereda commented 1 year ago

Hi Derek,

You don't need to install GeCo++ since RNAmotifs already contains all dependencies.

Give it a try and let me know.

BW, Matteo