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ImportError: ... /Documents/cantera-2.1.2/build/python2/cantera/_cantera.so: undefined symbol: CVodeSVtolerances #248

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
Hello,
My Cantera installation is not working properly. I get errors when running the 
tests.
I installed Cantera 2.1.2 in Ubuntu 14.04. I have also installed 
sundials-2.5.0,  cvode-2.7.0, cvodes-2.7.0, ida-2.7.0, idas-1.1.0,  
kinsol-2.7.0, using the--enable-share option

I use the suggested installation procedure:
1. scons build
2. scons install
3. scons test

(I have installed the latest version of sundials with --enable-shared option)

Seven test failed, here is a sample of the report that I get in screen

<<<
FAILED
printReport(["test_problems/finish_tests"], [])

*****************************
***    Testing Summary    ***
*****************************

Tests passed: 0
Up-to-date tests skipped: 48
Tests failed: 7
Failed tests:
    - cxx_ex
    - surfSolver2
    - cython2.passed
    - cython3.passed
    - diamondSurf-cti
    - diamondSurf-xml
    - surfSolver

*****************************
For the failing tests there were errors like this ones:
ImportError: 
/home/fernando/Documents/cantera-2.1.2/build/python2/cantera/_cantera.so: 
undefined symbol: CVodeSVtolerances

/home/fernando/Documents/cantera-2.1.2/test_problems/diamondSurf/runDiamond: 
symbol lookup error: 
/home/fernando/Documents/cantera-2.1.2/test_problems/diamondSurf/runDiamond: 
undefined symbol: N_VNew_Serial

etcetera

I am also attaching the screen output from scons test

If you know what could the problem I would greatly appreciate some help
Thanks
Fernando

Original issue reported on code.google.com by fercamac...@gmail.com on 10 Jan 2015 at 4:23

Attachments:

GoogleCodeExporter commented 8 years ago 
Can you post the output of running 'scons build VERBOSE=y' and 'scons test' 
after first running 'scons clean'? I have a guess as to what's happening, but 
this would help confirm it.

Original comment by yarmond on 12 Jan 2015 at 8:41

GoogleCodeExporter commented 8 years ago 
Thank you for the response. I am attaching the outputs from 'scons build 
VERBOSE=y' and 'scons test'. Now there is another test that fails 'negA-cti'.

Thanks

Original comment by fercamac...@gmail.com on 14 Jan 2015 at 4:28

Attachments:

GoogleCodeExporter commented 8 years ago 
Strange. It appears to be linking to the Sundials libraries, at least. What's 
the output of 'ldd test_problems/cxx_ex/cxx_examples'? There should be paths to 
libsundials_cvodes.something and libsundials_nvecserial.something.

What is the output of 'readelf -Ws /path/to/libsundials_cvodes.something' and 
'readelf -Ws /path/to/libsundials_nvecserial.something'? Do those files contain 
definitions for the symbols that it's trying to access?

Original comment by yarmond on 14 Jan 2015 at 11:07

GoogleCodeExporter commented 8 years ago 
Here are the outputs, the readelf command couldn't find the files:

~/Documents/cantera-2.1.2$ ldd test_problems/cxx_ex/cxx_examples
    linux-vdso.so.1 =>  (0x00007fffcd4a9000)
    libsundials_cvodes.so.2 => /usr/local/lib/libsundials_cvodes.so.2 (0x00007f7daf08e000)
    libsundials_nvecserial.so.0 => /usr/local/lib/libsundials_nvecserial.so.0 (0x00007f7daee8c000)
    libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f7daeb87000)
    libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f7dae881000)
    libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f7dae66b000)
    libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f7dae44c000)
    libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f7dae086000)
    /lib64/ld-linux-x86-64.so.2 (0x00007f7daf2bc000)

~/Documents/cantera-2.1.2$ readelf -Ws /path/to/libsundials_cvodes.something
readelf: Error: '/path/to/libsundials_cvodes.something': No such file

~/Documents/cantera-2.1.2$ readelf -Ws /path/to/libsundials_nvecserial.something
readelf: Error: '/path/to/libsundials_nvecserial.something': No such file

Original comment by fercamac...@gmail.com on 15 Jan 2015 at 3:03

GoogleCodeExporter commented 8 years ago 
Of course those files don't exist. I didn't mean that you should use that 
literal path, which obviously does not exist, but substitute the full path 
that's returned by the "ldd" command.

Original comment by yarmond on 15 Jan 2015 at 3:51

GoogleCodeExporter commented 8 years ago 
Here are the outputs:

~/Documents/cantera-2.1.2$ readelf -Ws /usr/local/lib/libsundials_cvodes.so.2

Symbol table '.dynsym' contains 12 entries:
   Num:    Value          Size Type    Bind   Vis      Ndx Name
     0: 0000000000000000     0 NOTYPE  LOCAL  DEFAULT  UND 
     1: 00000000000004f8     0 SECTION LOCAL  DEFAULT    9 
     2: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_deregisterTMCloneTable
     3: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND __gmon_start__
     4: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _Jv_RegisterClasses
     5: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_registerTMCloneTable
     6: 0000000000000000     0 FUNC    WEAK   DEFAULT  UND __cxa_finalize@GLIBC_2.2.5 (2)
     7: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   20 _edata
     8: 0000000000201038     0 NOTYPE  GLOBAL DEFAULT   21 _end
     9: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   21 __bss_start
    10: 00000000000004f8     0 FUNC    GLOBAL DEFAULT    9 _init
    11: 0000000000000638     0 FUNC    GLOBAL DEFAULT   12 _fini

Symbol table '.symtab' contains 50 entries:
   Num:    Value          Size Type    Bind   Vis      Ndx Name
     0: 0000000000000000     0 NOTYPE  LOCAL  DEFAULT  UND 
     1: 0000000000000190     0 SECTION LOCAL  DEFAULT    1 
     2: 00000000000001b8     0 SECTION LOCAL  DEFAULT    2 
     3: 00000000000001f0     0 SECTION LOCAL  DEFAULT    3 
     4: 0000000000000310     0 SECTION LOCAL  DEFAULT    4 
     5: 00000000000003cc     0 SECTION LOCAL  DEFAULT    5 
     6: 00000000000003e8     0 SECTION LOCAL  DEFAULT    6 
     7: 0000000000000408     0 SECTION LOCAL  DEFAULT    7 
     8: 00000000000004c8     0 SECTION LOCAL  DEFAULT    8 
     9: 00000000000004f8     0 SECTION LOCAL  DEFAULT    9 
    10: 0000000000000520     0 SECTION LOCAL  DEFAULT   10 
    11: 0000000000000550     0 SECTION LOCAL  DEFAULT   11 
    12: 0000000000000638     0 SECTION LOCAL  DEFAULT   12 
    13: 0000000000000648     0 SECTION LOCAL  DEFAULT   13 
    14: 0000000000200df0     0 SECTION LOCAL  DEFAULT   14 
    15: 0000000000200df8     0 SECTION LOCAL  DEFAULT   15 
    16: 0000000000200e00     0 SECTION LOCAL  DEFAULT   16 
    17: 0000000000200e08     0 SECTION LOCAL  DEFAULT   17 
    18: 0000000000200fd8     0 SECTION LOCAL  DEFAULT   18 
    19: 0000000000201000     0 SECTION LOCAL  DEFAULT   19 
    20: 0000000000201028     0 SECTION LOCAL  DEFAULT   20 
    21: 0000000000201030     0 SECTION LOCAL  DEFAULT   21 
    22: 0000000000000000     0 SECTION LOCAL  DEFAULT   22 
    23: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS crtstuff.c
    24: 0000000000200e00     0 OBJECT  LOCAL  DEFAULT   16 __JCR_LIST__
    25: 0000000000000550     0 FUNC    LOCAL  DEFAULT   11 deregister_tm_clones
    26: 0000000000000580     0 FUNC    LOCAL  DEFAULT   11 register_tm_clones
    27: 00000000000005c0     0 FUNC    LOCAL  DEFAULT   11 __do_global_dtors_aux
    28: 0000000000201030     1 OBJECT  LOCAL  DEFAULT   21 completed.6972
    29: 0000000000200df8     0 OBJECT  LOCAL  DEFAULT   15 __do_global_dtors_aux_fini_array_entry
    30: 0000000000000600     0 FUNC    LOCAL  DEFAULT   11 frame_dummy
    31: 0000000000200df0     0 OBJECT  LOCAL  DEFAULT   14 __frame_dummy_init_array_entry
    32: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS crtstuff.c
    33: 0000000000000648     0 OBJECT  LOCAL  DEFAULT   13 __FRAME_END__
    34: 0000000000200e00     0 OBJECT  LOCAL  DEFAULT   16 __JCR_END__
    35: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS 
    36: 0000000000201028     0 OBJECT  LOCAL  DEFAULT   20 __dso_handle
    37: 0000000000200e08     0 OBJECT  LOCAL  DEFAULT   17 _DYNAMIC
    38: 0000000000201030     0 OBJECT  LOCAL  DEFAULT   20 __TMC_END__
    39: 0000000000201000     0 OBJECT  LOCAL  DEFAULT   19 _GLOBAL_OFFSET_TABLE_
    40: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_deregisterTMCloneTable
    41: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   20 _edata
    42: 0000000000000638     0 FUNC    GLOBAL DEFAULT   12 _fini
    43: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND __gmon_start__
    44: 0000000000201038     0 NOTYPE  GLOBAL DEFAULT   21 _end
    45: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   21 __bss_start
    46: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _Jv_RegisterClasses
    47: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_registerTMCloneTable
    48: 0000000000000000     0 FUNC    WEAK   DEFAULT  UND __cxa_finalize@@GLIBC_2.2.5
    49: 00000000000004f8     0 FUNC    GLOBAL DEFAULT    9 _init

~/Documents/cantera-2.1.2$ readelf -Ws 
/usr/local/lib/libsundials_nvecserial.so.0

Symbol table '.dynsym' contains 12 entries:
   Num:    Value          Size Type    Bind   Vis      Ndx Name
     0: 0000000000000000     0 NOTYPE  LOCAL  DEFAULT  UND 
     1: 00000000000004f8     0 SECTION LOCAL  DEFAULT    9 
     2: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_deregisterTMCloneTable
     3: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND __gmon_start__
     4: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _Jv_RegisterClasses
     5: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_registerTMCloneTable
     6: 0000000000000000     0 FUNC    WEAK   DEFAULT  UND __cxa_finalize@GLIBC_2.2.5 (2)
     7: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   20 _edata
     8: 0000000000201038     0 NOTYPE  GLOBAL DEFAULT   21 _end
     9: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   21 __bss_start
    10: 00000000000004f8     0 FUNC    GLOBAL DEFAULT    9 _init
    11: 0000000000000638     0 FUNC    GLOBAL DEFAULT   12 _fini

Symbol table '.symtab' contains 50 entries:
   Num:    Value          Size Type    Bind   Vis      Ndx Name
     0: 0000000000000000     0 NOTYPE  LOCAL  DEFAULT  UND 
     1: 0000000000000190     0 SECTION LOCAL  DEFAULT    1 
     2: 00000000000001b8     0 SECTION LOCAL  DEFAULT    2 
     3: 00000000000001f0     0 SECTION LOCAL  DEFAULT    3 
     4: 0000000000000310     0 SECTION LOCAL  DEFAULT    4 
     5: 00000000000003d0     0 SECTION LOCAL  DEFAULT    5 
     6: 00000000000003e8     0 SECTION LOCAL  DEFAULT    6 
     7: 0000000000000408     0 SECTION LOCAL  DEFAULT    7 
     8: 00000000000004c8     0 SECTION LOCAL  DEFAULT    8 
     9: 00000000000004f8     0 SECTION LOCAL  DEFAULT    9 
    10: 0000000000000520     0 SECTION LOCAL  DEFAULT   10 
    11: 0000000000000550     0 SECTION LOCAL  DEFAULT   11 
    12: 0000000000000638     0 SECTION LOCAL  DEFAULT   12 
    13: 0000000000000648     0 SECTION LOCAL  DEFAULT   13 
    14: 0000000000200df0     0 SECTION LOCAL  DEFAULT   14 
    15: 0000000000200df8     0 SECTION LOCAL  DEFAULT   15 
    16: 0000000000200e00     0 SECTION LOCAL  DEFAULT   16 
    17: 0000000000200e08     0 SECTION LOCAL  DEFAULT   17 
    18: 0000000000200fd8     0 SECTION LOCAL  DEFAULT   18 
    19: 0000000000201000     0 SECTION LOCAL  DEFAULT   19 
    20: 0000000000201028     0 SECTION LOCAL  DEFAULT   20 
    21: 0000000000201030     0 SECTION LOCAL  DEFAULT   21 
    22: 0000000000000000     0 SECTION LOCAL  DEFAULT   22 
    23: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS crtstuff.c
    24: 0000000000200e00     0 OBJECT  LOCAL  DEFAULT   16 __JCR_LIST__
    25: 0000000000000550     0 FUNC    LOCAL  DEFAULT   11 deregister_tm_clones
    26: 0000000000000580     0 FUNC    LOCAL  DEFAULT   11 register_tm_clones
    27: 00000000000005c0     0 FUNC    LOCAL  DEFAULT   11 __do_global_dtors_aux
    28: 0000000000201030     1 OBJECT  LOCAL  DEFAULT   21 completed.6972
    29: 0000000000200df8     0 OBJECT  LOCAL  DEFAULT   15 __do_global_dtors_aux_fini_array_entry
    30: 0000000000000600     0 FUNC    LOCAL  DEFAULT   11 frame_dummy
    31: 0000000000200df0     0 OBJECT  LOCAL  DEFAULT   14 __frame_dummy_init_array_entry
    32: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS crtstuff.c
    33: 0000000000000648     0 OBJECT  LOCAL  DEFAULT   13 __FRAME_END__
    34: 0000000000200e00     0 OBJECT  LOCAL  DEFAULT   16 __JCR_END__
    35: 0000000000000000     0 FILE    LOCAL  DEFAULT  ABS 
    36: 0000000000201028     0 OBJECT  LOCAL  DEFAULT   20 __dso_handle
    37: 0000000000200e08     0 OBJECT  LOCAL  DEFAULT   17 _DYNAMIC
    38: 0000000000201030     0 OBJECT  LOCAL  DEFAULT   20 __TMC_END__
    39: 0000000000201000     0 OBJECT  LOCAL  DEFAULT   19 _GLOBAL_OFFSET_TABLE_
    40: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_deregisterTMCloneTable
    41: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   20 _edata
    42: 0000000000000638     0 FUNC    GLOBAL DEFAULT   12 _fini
    43: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND __gmon_start__
    44: 0000000000201038     0 NOTYPE  GLOBAL DEFAULT   21 _end
    45: 0000000000201030     0 NOTYPE  GLOBAL DEFAULT   21 __bss_start
    46: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _Jv_RegisterClasses
    47: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_registerTMCloneTable
    48: 0000000000000000     0 FUNC    WEAK   DEFAULT  UND __cxa_finalize@@GLIBC_2.2.5
    49: 00000000000004f8     0 FUNC    GLOBAL DEFAULT    9 _init

Original comment by fercamac...@gmail.com on 15 Jan 2015 at 10:49

GoogleCodeExporter commented 8 years ago 
Something is wrong with the Sundials libraries you compiled. They don't seem to 
contain any of the Sundials symbols. This is not a problem with Cantera. For 
comparison, here is the symbol table I get for the libsundials_nvecserial.so.0 
file in the Ubuntu packaged copy of Sundials:

Symbol table '.dynsym' contains 56 entries:
   Num:    Value          Size Type    Bind   Vis      Ndx Name
     0: 0000000000000000     0 NOTYPE  LOCAL  DEFAULT  UND 
     1: 0000000000000e80     0 SECTION LOCAL  DEFAULT    9 
     2: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND free@GLIBC_2.2.5 (2)
     3: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND putchar@GLIBC_2.2.5 (2)
     4: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_deregisterTMCloneTable
     5: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND exp@GLIBC_2.2.5 (3)
     6: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND pow@GLIBC_2.2.5 (3)
     7: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND __gmon_start__
     8: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND malloc@GLIBC_2.2.5 (2)
     9: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND __printf_chk@GLIBC_2.3.4 (4)
    10: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _Jv_RegisterClasses
    11: 0000000000000000     0 NOTYPE  WEAK   DEFAULT  UND _ITM_registerTMCloneTable
    12: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND sqrt@GLIBC_2.2.5 (3)
    13: 0000000000000000     0 FUNC    WEAK   DEFAULT  UND __cxa_finalize@GLIBC_2.2.5 (2)
    14: 00000000000010e0    58 FUNC    GLOBAL DEFAULT   11 N_VDiv_Serial
    15: 0000000000001c90   256 FUNC    GLOBAL DEFAULT   11 N_VScale_Serial
    16: 0000000000001fa0    52 FUNC    GLOBAL DEFAULT   11 N_VMake_Serial
    17: 0000000000001640    78 FUNC    GLOBAL DEFAULT   11 N_VAbs_Serial
    18: 0000000000002238     0 FUNC    GLOBAL DEFAULT   12 _fini
    19: 00000000000019a0   740 FUNC    GLOBAL DEFAULT   11 N_VLinearSum_Serial
    20: 00000000000013a0   111 FUNC    GLOBAL DEFAULT   11 N_VMinQuotient_Serial
    21: 00000000000015a0    78 FUNC    GLOBAL DEFAULT   11 N_VDestroy_Serial
    22: 0000000000001840   100 FUNC    GLOBAL DEFAULT   11 N_VWrmsNormMask_Serial
    23: 0000000000002220    13 FUNC    GLOBAL DEFAULT   11 RAbs
    24: 00000000000011e0    55 FUNC    GLOBAL DEFAULT   11 N_VMin_Serial
    25: 0000000000001770   125 FUNC    GLOBAL DEFAULT   11 N_VCompare_Serial
    26: 0000000000001030    17 FUNC    GLOBAL DEFAULT   11 N_VSpace_Serial
    27: 00000000000018b0    64 FUNC    GLOBAL DEFAULT   11 N_VWL2Norm_Serial
    28: 00000000000015f0    80 FUNC    GLOBAL DEFAULT   11 N_VClone_Serial
    29: 00000000000011a0    59 FUNC    GLOBAL DEFAULT   11 N_VDotProd_Serial
    30: 00000000000021f0    33 FUNC    GLOBAL DEFAULT   11 RSqrt
    31: 0000000000001160    57 FUNC    GLOBAL DEFAULT   11 N_VAddConst_Serial
    32: 0000000000001220   130 FUNC    GLOBAL DEFAULT   11 N_VInvTest_Serial
    33: 0000000000002020   118 FUNC    GLOBAL DEFAULT   11 N_VCloneVectorArray_Serial
    34: 0000000000001710    81 FUNC    GLOBAL DEFAULT   11 N_VL1Norm_Serial
    35: 0000000000001fe0    61 FUNC    GLOBAL DEFAULT   11 N_VDestroyVectorArray_Serial
    36: 00000000000017f0    73 FUNC    GLOBAL DEFAULT   11 N_VWrmsNorm_Serial
    37: 00000000000020a0   118 FUNC    GLOBAL DEFAULT   11 N_VCloneVectorArrayEmpty_Serial
    38: 0000000000002230     5 FUNC    GLOBAL DEFAULT   11 RExp
    39: 0000000000001120    57 FUNC    GLOBAL DEFAULT   11 N_VInv_Serial
    40: 0000000000002170    82 FUNC    GLOBAL DEFAULT   11 RPowerI
    41: 0000000000001690   121 FUNC    GLOBAL DEFAULT   11 N_VMaxNorm_Serial
    42: 0000000000203068     0 NOTYPE  GLOBAL DEFAULT   23 __bss_start
    43: 0000000000001f40    96 FUNC    GLOBAL DEFAULT   11 N_VNew_Serial
    44: 0000000000203070     0 NOTYPE  GLOBAL DEFAULT   23 _end
    45: 0000000000002120    75 FUNC    GLOBAL DEFAULT   11 N_VPrint_Serial
    46: 0000000000001070    39 FUNC    GLOBAL DEFAULT   11 N_VConst_Serial
    47: 00000000000010a0    58 FUNC    GLOBAL DEFAULT   11 N_VProd_Serial
    48: 0000000000001050     8 FUNC    GLOBAL DEFAULT   11 N_VGetArrayPointer_Serial
    49: 0000000000203068     0 NOTYPE  GLOBAL DEFAULT   22 _edata
    50: 00000000000021d0    21 FUNC    GLOBAL DEFAULT   11 RPowerR
    51: 0000000000001060    15 FUNC    GLOBAL DEFAULT   11 N_VSetArrayPointer_Serial
    52: 0000000000001d90   432 FUNC    GLOBAL DEFAULT   11 N_VNewEmpty_Serial
    53: 0000000000001410   399 FUNC    GLOBAL DEFAULT   11 N_VCloneEmpty_Serial
    54: 0000000000000e80     0 FUNC    GLOBAL DEFAULT    9 _init
    55: 00000000000012b0   240 FUNC    GLOBAL DEFAULT   11 N_VConstrMask_Serial

Original comment by yarmond on 16 Jan 2015 at 12:54

GoogleCodeExporter commented 8 years ago 
That is odd, which version of sundials are you using I got mine from 
https://computation.llnl.gov/casc/sundials/main.html, and downloaded the 
v.2.5.0 version.
Could it be some of the configuration options? I did 
./configure --enable-shared
make
sudo make install

Original comment by fercamac...@gmail.com on 16 Jan 2015 at 3:19

GoogleCodeExporter commented 8 years ago 
I'm using Ubuntu package for Sundials (e.g. "aptitude install 
libsundials-serial-dev"). When I've compiled Sundials manually in the past, I 
think I usually just build the static libraries, but I think it ought to work 
either way. Are you able to compile and run the Sundials examples?

Original comment by yarmond on 18 Jan 2015 at 4:50