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matthiasbock / BooleSim

Systems biology tool: Boolean network simulator
http://matthiasbock.github.io/BooleSim
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Ginsim importer #60

Open andrea-vandin opened 8 years ago

andrea-vandin commented 8 years ago

Hi,

I just downloaded your repository. I would like to import a GINSIM model, and then convert it in booleannet format.

However, in the "Import" menu there is not an entry for GINSIM (which instead appears here: https://github.com/matthiasbock/BooleSim/wiki/Usage#Import_a_network).

matthiasbock commented 8 years ago

GINML support is present in the code, but has been disabled as of commit ad4425c52ce0ead294f104a395fc42da78d012f6. I can't tell you why right now, the commit message doesn't say. I would have to read into the code...

andrea-vandin commented 8 years ago

Hi Matthias,

thank you very much for your reply.

Maybe because the ginml format has several "versions", and your tool supports only some? In fact, trying to import this file (http://ginsim.org/node/78) via "infer format" I get an error message (Import failed: There appear to be syntax errors in your input file.)

Regards