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matthiaskoenig / annotatedb

Annotation database for computational models
https://annotatedb.com
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Bug in metanetx identifiers prefixes #42

Open matthiaskoenig opened 2 years ago

matthiaskoenig commented 2 years ago

See https://github.com/draeger-lab/ModelPolisher/issues/106 for more details.

Schmoho commented 4 days ago 

SELECT * from  adb_collection ac 
WHERE ac.urlpattern = '{$id}' ;

SELECT * from  adb_collection ac 
WHERE ac.miriam = false ;

liefern beide:

"id" "namespace" "miriam" "name" "idpattern" "urlpattern" 677 "refseq_locus_tag" false "RefSeq Locus Tag" "." "{$id}" 678 "refseq_name" false "RefSeq Gene Name" "." "{$id}" 679 "ncbigi" false "NCBI GI" "." "{$id}" 680 "EnsemblGenomes-Gn" false "EnsemblGenomes-Gn" "." "{$id}" 681 "EnsemblGenomes-Tr" false "EnsemblGenomes-Tr" "." "{$id}" 682 "PSEUDO" false "PSEUDO" "." "{$id}" 683 "refseq_synonym" false "RefSeq Gene Synonym" "." "{$id}" 684 "refseq_old_locus_tag" false "RefSeq Old Locus Tag" "." "{$id}" 685 "IMGT/GENE-DB" false "IMGT/GENE-DB" "." "{$id}" 686 "omim" false "Online Mendelian Inheritance in Man" "." "{$id}" 687 "refseq_orf_id" false "RefSeq ORF ID" "." "{$id}" 688 "old_bigg_id" false "Old BiGG ID" "." "{$id}" 689 "deprecated" false "deprecated" "." "{$id}" 690 "slm" false "slm" "." "{$id}" 691 "envipath" false "envipath" "." "{$id}" 692 "metanetx.equation" false "MetaNetX (MNX) Equation" "." "{$id}"