search

matthiaskoenig / brendapy

BRENDA parser in python
GNU Lesser General Public License v3.0
19 stars 6 forks source link

brenda_download.txt - file not downloaded during installation #25

Closed DeepaMahm closed 5 years ago

DeepaMahm commented 5 years ago

After installing brendapy via pip install brendapy , brenda_download.txt wasn't found in the resources folder.

I tried manually downloading it from the github link, https://github.com/matthiaskoenig/brendapy/blob/develop/brendapy/resources/brenda_download.txt. But I couldn't find the complete contents of the file.

I also tried to download the file from brenda- downloads. There is a Unicode error while running brenda_parser.py using the input file(brenda_download.txt) downloaded from brenda. return codecs.charmap_decode(input,self.errors,decoding_table)[0] UnicodeDecodeError: 'charmap' codec can't decode byte 0x8d in position 4870: character maps to <undefined>

matthiaskoenig commented 5 years ago

Hi @DeepaMahm, this is related to #15 (my bandwidth quota was reached, so I have to host the file somewhere else, so basically a duplicate of that issue). I will fix this today latest tomorrow.

Best Matthias

DeepaMahm commented 5 years ago

Hi @matthiaskoenig Could you please let me know if this issue is fixed?

DeepaMahm commented 5 years ago

Hi @matthiaskoenig This error reported above is also resolved by using the solution posted here

matthiaskoenig commented 5 years ago

@DeepaMahm Perfect. I thought it was a different issue.