Closed Karrenbelt closed 4 years ago
@Karrenbelt Thanks for reporting this. Could you provide some concrete example, i.e., ec and protein id? This will make it much easier to implement and test this.
certainly, the first one I run into if I parse all E.C. numbers is E.C. 1.1.1.1 for Mus Musculus KI's. It contains 27 entries, of which only 9 are unique. I just tested how often this occurs: it occurs 5674 times in total parsing all E.C. numbers for KI, KM and TN's, and interestingly all of them are multiples of 3.
I had to zip the pickled object to be able to attach it example.p.zip
This is a bit more complicated to fix, because I have to ensure that the complete dictionary is unique. The underlying problem is that the BRENDA flat file writes the same KI 3 times in the file.
This is now fixed and the underlying issue is reported to BRENDA. Functionality will be in the next release.
there is some redundant information stored in BRENDA (duplicate km, ki, kcats). It would be nice to have the option to filter these, for which I suggest:
let me know what you think, or if I'm wrong about the redundant information