Changes for v0.4.0

[matthiaskoenig]

0.4.0

• resolving uniprot and swissprot information
• removing redundant information
• fixing references in entries
• mapping to BRENDA tissue ontology (BTO)
• mapping to chebi ontology
• bugfixes (encoding issues, organism parsing, taxonomy, ...)
• removing git-lfs dependencies

[codecov[bot]]

Codecov Report

Merging #33 into master will decrease coverage by 13.68%. The diff coverage is 52.55%.

@@             Coverage Diff             @@
##           master      #33       +/-   ##
===========================================
- Coverage   88.02%   74.33%   -13.69%     
===========================================
  Files          10       14        +4     
  Lines         576      795      +219     
===========================================
+ Hits          507      591       +84     
- Misses         69      204      +135

Impacted Files	Coverage Δ
brendapy/utils.py	55.55% <ø> (ø)	:arrow_up:
brendapy/examples.py	90.9% <ø> (+0.21%)	:arrow_up:
brendapy/ontology/owl.py	0% <0%> (ø)
brendapy/ontology/pubchem.py	0% <0%> (ø)
brendapy/_version.py	0% <0%> (ø)	:arrow_up:
brendapy/taxonomy.py	93.47% <100%> (+0.21%)	:arrow_up:
brendapy/settings.py	100% <100%> (ø)	:arrow_up:
brendapy/tests/test_brenda.py	100% <100%> (ø)	:arrow_up:
brendapy/substances.py	80% <80%> (ø)
brendapy/tissues.py	85.71% <85.71%> (ø)
... and 6 more

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