search

matthiaskoenig / brendapy

BRENDA parser in python
GNU Lesser General Public License v3.0
19 stars 6 forks source link

Issue with the common names displayed while parsing taxonomy information #35

Open DeepaMahm opened 4 years ago

DeepaMahm commented 4 years ago

Hi @matthiaskoenig Source code: example.py

While parsing proteins by taxonomy using parse_proteins_by_taxonomy() function defined in the above file , the following output is displayed for ec = "1.1.1.1"

 protein_id                               organism  taxonomy         common_name  common_dist
23           12                  Oryctolagus cuniculus      9986    Euarchontoglires            9
153           9                      Rattus norvegicus     10116    Euarchontoglires            9
78            2                     Cricetulus griseus     10029    Euarchontoglires            9
111           5                           Mus musculus     10090    Euarchontoglires            9
96           36                   Mesocricetus auratus     10036    Euarchontoglires            9
19          116                           Mus musculus     10090    Euarchontoglires            9

The common names are the same for all the above organisms. Could you please look into this?