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matthiaskoenig / brendapy

BRENDA parser in python
GNU Lesser General Public License v3.0
19 stars 6 forks source link

Problem with ujson when installing via PIP #37

Closed bilehtin closed 2 years ago

bilehtin commented 4 years ago

Hi @matthiaskoenig Thanks for this nice package. I hope I get to use it soon. I'm actually having a problem installing it via pip, specifically with ujson. It says

"ERROR: Could not build wheels for ujson which use PEP 517 and cannot be installed directly" Would you know how to solve this? So far I tried to install without PEP517 but this didn't work either.

I'm pasting the whole traceback below

Thanks, Birgitta

computer:~ blehtinen$ pip install brendapy Processing ./Library/Caches/pip/wheels/07/4e/60/5aaf253071c0064f28bf0fc4a928066ef114a230c585eb5ec8/brendapy-0.4.1-cp36-none-any.whl Requirement already satisfied: pip>=19 in /anaconda3/lib/python3.6/site-packages (from brendapy) (20.0.2) Processing ./Library/Caches/pip/wheels/a4/f5/cd/357e802aa4c8313bf7ee78aa89b9791cef93661ff112259520/Owlready2-0.23-cp36-none-any.whl Collecting ujson>=1.35 Using cached ujson-2.0.2.tar.gz (7.1 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing wheel metadata ... done Requirement already satisfied: requests>=2.22 in /anaconda3/lib/python3.6/site-packages (from brendapy) (2.23.0) Requirement already satisfied: pyparsing>=2.4.2 in /anaconda3/lib/python3.6/site-packages (from brendapy) (2.4.6) Requirement already satisfied: pandas>=0.25 in /anaconda3/lib/python3.6/site-packages (from brendapy) (1.0.3) Requirement already satisfied: certifi>=2017.4.17 in /anaconda3/lib/python3.6/site-packages (from requests>=2.22->brendapy) (2019.11.28) Requirement already satisfied: idna<3,>=2.5 in /anaconda3/lib/python3.6/site-packages (from requests>=2.22->brendapy) (2.6) Requirement already satisfied: chardet<4,>=3.0.2 in /anaconda3/lib/python3.6/site-packages (from requests>=2.22->brendapy) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /anaconda3/lib/python3.6/site-packages (from requests>=2.22->brendapy) (1.22) Requirement already satisfied: numpy>=1.13.3 in /anaconda3/lib/python3.6/site-packages (from pandas>=0.25->brendapy) (1.14.2) Requirement already satisfied: pytz>=2017.2 in /anaconda3/lib/python3.6/site-packages (from pandas>=0.25->brendapy) (2017.3) Requirement already satisfied: python-dateutil>=2.6.1 in /anaconda3/lib/python3.6/site-packages (from pandas>=0.25->brendapy) (2.6.1) Requirement already satisfied: six>=1.5 in /anaconda3/lib/python3.6/site-packages (from python-dateutil>=2.6.1->pandas>=0.25->brendapy) (1.11.0) Building wheels for collected packages: ujson Building wheel for ujson (PEP 517) ... error ERROR: Command errored out with exit status 1: command: /anaconda3/bin/python /anaconda3/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /var/folders/vm/mzshf8w54cx72nn346yhbyyh0000gn/T/tmppk6e_6_f cwd: /private/var/folders/vm/mzshf8w54cx72nn346yhbyyh0000gn/T/pip-install-ldxzrn89/ujson Complete output (14 lines): running bdist_wheel running build running build_ext building 'ujson' extension creating build creating build/temp.macosx-10.7-x86_64-3.6 creating build/temp.macosx-10.7-x86_64-3.6/deps creating build/temp.macosx-10.7-x86_64-3.6/deps/double-conversion creating build/temp.macosx-10.7-x86_64-3.6/deps/double-conversion/double-conversion creating build/temp.macosx-10.7-x86_64-3.6/lib creating build/temp.macosx-10.7-x86_64-3.6/python gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/anaconda3/include -arch x86_64 -I/anaconda3/include -arch x86_64 -I./python -I./lib -I./deps/double-conversion/double-conversion -I/anaconda3/include/python3.6m -c ./deps/double-conversion/double-conversion/bignum.cc -o build/temp.macosx-10.7-x86_64-3.6/./deps/double-conversion/double-conversion/bignum.o -D_GNU_SOURCE xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for ujson Failed to build ujson ERROR: Could not build wheels for ujson which use PEP 517 and cannot be installed directly

matthiaskoenig commented 2 years ago

This is related to ujson and should be fixed in the upcoming release.