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matthiaskoenig / brendapy

BRENDA parser in python
GNU Lesser General Public License v3.0
19 stars 6 forks source link

Resources host is down #39

Closed lyinch closed 2 years ago

lyinch commented 2 years ago

Hello,

The host where the zip file is stored is down

$ ping 141.20.66.64 -c 3
PING 141.20.66.64 (141.20.66.64): 56 data bytes
Request timeout for icmp_seq 0
Request timeout for icmp_seq 1

--- 141.20.66.64 ping statistics ---
3 packets transmitted, 0 packets received, 100.0% packet loss

This means that I can't use the package as it tries to download it on startup.

It would be ideal to add the original sources in the readme so that users can download them manually in case the aggregated zip file is unavailable again in the future. I assume that these are the sources although they are not all in json:

BRENDA: https://www.brenda-enzymes.org/download_brenda_without_registration.php TAXONOMY_ZIP: https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ BTO: https://www.ebi.ac.uk/ols/ontologies/bto CHEBI: https://www.ebi.ac.uk/chebi/

Thank you

matthiaskoenig commented 2 years ago

Sorry for that. We currently have issus with our university network. I will have a look during the day.

matthiaskoenig commented 2 years ago

Sorry for the delay, things are back to normal.

what-is-what commented 2 years ago

We cannot have an access to 141.20.66.64.

--2022-05-13 17:20:42-- http://141.20.66.64/brendapy/brendapy-data-v0.4.0.zip Connecting to 141.20.66.64:80... failed: Connection timed out.

Is there any solution?

matthiaskoenig commented 2 years ago

Will provide a solution during the day. Thanks for the report.

matthiaskoenig commented 2 years ago

Will be solved as part of #38, i.e. we have to update the BRENDA files and provide a stable download.