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matthiaskoenig / fbc_curation

FROG analysis in python for the reproducibility of FBC models
https://runfrog.de
GNU Lesser General Public License v3.0
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Issue with COVID model #56

Closed matthiaskoenig closed 2 years ago

matthiaskoenig commented 2 years ago 
Traceback (most recent call last):
  File "/usr/local/lib/python3.9/site-packages/celery/app/trace.py", line 450, in trace_task
    R = retval = fun(*args, **kwargs)
  File "/usr/local/lib/python3.9/site-packages/celery/app/trace.py", line 731, in __protected_call__
    return self.run(*args, **kwargs)
  File "/code/src/fbc_curation/worker.py", line 84, in frog_task
    report.to_tsvs_with_metadata(tmp_path)
  File "/code/src/fbc_curation/frog.py", line 306, in to_tsvs_with_metadata
    df.sort_values(by=["gene"], inplace=True)
  File "/usr/local/lib/python3.9/site-packages/pandas/util/_decorators.py", line 311, in wrapper
    return func(*args, **kwargs)
  File "/usr/local/lib/python3.9/site-packages/pandas/core/frame.py", line 6259, in sort_values
    k = self._get_label_or_level_values(by, axis=axis)
  File "/usr/local/lib/python3.9/site-packages/pandas/core/generic.py", line 1779, in _get_label_or_level_values
    raise KeyError(key)
KeyError: 'gene'
matthiaskoenig commented 2 years ago

There are no genes in the model, so gene deletions fail.