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matthiaskoenig / fbc_curation

FROG analysis in python for the reproducibility of FBC models
https://runfrog.de
GNU Lesser General Public License v3.0
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Update documentation of comparison with reference files #72

Closed matthiaskoenig closed 2 years ago

matthiaskoenig commented 2 years ago

Some outdated documentation.

Hi Matthias, Also, the example command for compare reference is incorrect and need to be fixed https://fbc-curation.readthedocs.io/en/latest/usage.html#create-reference-files

Compare existing reference files

In addition existing reference files can be compared with the solutions by cobrapy and cameo. The --reference argument can be used to provide the path to the reference files.

fbc_curation --model ./fbc_curation/examples/models/e_coli_core.xml \
--path ./fbc_curation/examples/results/e_coli_core

Best Sheriff

matthiaskoenig commented 2 years ago

Will be fixed as part of #81