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matthiaskoenig
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sbmlsim
sbmlsim: SBML simulation made easy
GNU Lesser General Public License v3.0
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Bump url-parse from 1.5.1 to 1.5.3 in /reports/fit-report
#115
dependabot[bot]
closed
3 years ago
1
Goodness of fit plot for parameter estimation
#114
matthiaskoenig
opened
3 years ago
0
Bump path-parse from 1.0.6 to 1.0.7 in /reports/fit-report
#113
dependabot[bot]
closed
3 years ago
1
Error after running `pip install -e . --upgrade`
#112
JBrandh
closed
3 years ago
1
Clamp model changes are not working
#111
matthiaskoenig
opened
3 years ago
0
Check validity of fit mappings on executing simulation experiment
#110
matthiaskoenig
opened
3 years ago
0
Support for SED-ML/COMBINE validation
#109
matthiaskoenig
opened
3 years ago
0
Bump dns-packet from 1.3.1 to 1.3.4 in /reports/fit-report
#108
dependabot[bot]
closed
3 years ago
2
Bump hosted-git-info from 2.8.8 to 2.8.9 in /reports/fit-report
#107
dependabot[bot]
closed
3 years ago
2
Bump ssri from 6.0.1 to 6.0.2 in /reports/fit-report
#106
dependabot[bot]
closed
3 years ago
2
Support kisao via kisao library
#105
matthiaskoenig
opened
3 years ago
0
Move legends outside of plot
#104
matthiaskoenig
opened
3 years ago
0
Provide a simulator in biosimulators
#103
matthiaskoenig
opened
3 years ago
1
Support generation of webgraphics from matplotlib backend (mpld3)
#102
matthiaskoenig
opened
3 years ago
0
Optimization fails with data with all NaN y-errors
#101
matthiaskoenig
closed
3 years ago
0
Add API documentation to docs
#100
matthiaskoenig
opened
3 years ago
0
Implement loss function for parameter fitting
#99
matthiaskoenig
closed
3 years ago
0
Bump webpack-dev-server from 2.11.5 to 3.1.11 in /reports/fit-report
#98
dependabot[bot]
closed
3 years ago
1
Bug in normalization of SensitivityScan
#97
matthiaskoenig
opened
3 years ago
0
Updated parameter fitting results plot
#96
matthiaskoenig
closed
3 years ago
0
Handle units consistently in JSON serialization
#95
matthiaskoenig
opened
3 years ago
0
Update xarray to v0.17.0
#94
matthiaskoenig
closed
3 years ago
0
Feature parameter fitting
#93
matthiaskoenig
closed
3 years ago
0
Serialization of SimulationExperiments not working (from_dict)
#92
matthiaskoenig
opened
3 years ago
0
Support Hex colors in plotting
#91
matthiaskoenig
closed
3 years ago
0
Fix mypy issues
#90
matthiaskoenig
opened
3 years ago
0
Fix flake8 issues
#89
matthiaskoenig
closed
2 years ago
0
Figures not closed in parameter fitting (consuming too much memory)
#88
matthiaskoenig
closed
3 years ago
1
Weighting by counts in parameter fitting
#87
matthiaskoenig
closed
3 years ago
0
Dependency update: ray 1.2.0
#86
matthiaskoenig
closed
3 years ago
0
Fitting of individual parameters per experiment/ group of experiments
#85
matthiaskoenig
opened
3 years ago
0
Save/export model with model changes
#84
matthiaskoenig
opened
3 years ago
0
Allow None timecourses in timecourse sim
#83
matthiaskoenig
closed
3 years ago
0
Remove time shift from discarded timecourses
#82
matthiaskoenig
closed
3 years ago
0
Timecourses must be deepcopied in TimecourseSim creation
#81
matthiaskoenig
closed
3 years ago
0
Changes for v0.1.13
#80
matthiaskoenig
closed
3 years ago
0
Implement RMSD report for parameter fitting / model simulations;
#79
matthiaskoenig
closed
3 years ago
0
Issue templates and dependency information
#78
matthiaskoenig
closed
3 years ago
0
Fix deprecated actions and make release
#77
matthiaskoenig
closed
3 years ago
0
Package templates in pip packages
#76
matthiaskoenig
closed
3 years ago
0
Support python 3.9
#75
matthiaskoenig
closed
2 years ago
1
Implement relative simulation experiments in parameter fitting
#74
matthiaskoenig
closed
3 years ago
1
Storage and combination of parameter fitting results
#73
matthiaskoenig
closed
3 years ago
0
Better cost improvement plot (parameter fitting)
#72
matthiaskoenig
closed
3 years ago
0
Update from develop
#71
github-actions[bot]
closed
3 years ago
1
How to adjust number of cores used for simulations.
#70
adriankl
closed
3 years ago
1
InitialAssignments have to be applied after model changes
#69
matthiaskoenig
closed
3 years ago
3
Update from develop
#68
github-actions[bot]
closed
4 years ago
1
Using external data to drive model
#67
matthiaskoenig
opened
4 years ago
0
Changes on models and simulations are not normalized correctly in JSON output
#66
matthiaskoenig
closed
4 years ago
0
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