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matthiaskoenig / sbmlutils

Python utilities for SBML
https://sbmlutils.readthedocs.io/en/stable/
GNU Lesser General Public License v3.0
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Support OMEX/COMBINE archives for SBML reports #225

Closed matthiaskoenig closed 3 years ago

matthiaskoenig commented 3 years ago
sankha555 commented 3 years ago

@matthiaskoenig Sorry that I could not start working on the issue yesterday as I had committed in the mail, due to some issues here at my end. I will extract the models to read and generate reports for them. I just wanted to confirm if this source is good for extracting the models or I should go to some other source:

https://github.com/SED-ML/sedml-test-suite

Please let me know if I should get the models from some other source. I would make tests and generate the reports for them and make a pull request to add the same. Thanks!

matthiaskoenig commented 3 years ago

We would add our own test models. For now you should have a look at the publication describing the archive https://pubmed.ncbi.nlm.nih.gov/25494900/ There is nothing more to do here for now. I will add the necessary example for reading a combine archive so you can work from there on. This will depend on https://github.com/matthiaskoenig/sbmlutils/issues/227

sankha555 commented 3 years ago

Sure Sir, I would make the changes as soon as the models are up, and will continue with the study of this publication now. Thanks!