matthiaskoenig / tellurium-web

Tellurium Web Tools
GNU Lesser General Public License v3.0
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MathML issue with case05 - probably min/max issue #55

Closed matthiaskoenig closed 6 years ago

matthiaskoenig commented 7 years ago

Some issue with executing the test case 05.

                    Traceback (most recent call last):
  File "/home/mkoenig/envs/tellurium-web/lib/python3.5/site-packages/celery/app/trace.py", line 374, in trace_task
    R = retval = fun(*args, **kwargs)
  File "/home/mkoenig/envs/tellurium-web/lib/python3.5/site-packages/celery/app/trace.py", line 629, in __protected_call__
    return self.run(*args, **kwargs)
  File "/home/mkoenig/git/tellurium-web/teweb/combine/tasks.py", line 63, in execute_omex
    dgs_all = tellurium.sedml.tesedml.executeOMEX(omex_path, workingDir=tmp_dir)
  File "/home/mkoenig/git/tellurium/tellurium/sedml/tesedml.py", line 192, in executeOMEX
    factory = SEDMLCodeFactory(sedmlFile, workingDir=os.path.dirname(sedmlFile))
  File "/home/mkoenig/git/tellurium/tellurium/sedml/tesedml.py", line 326, in __init__
    info = SEDMLTools.readSEDMLDocument(inputStr, workingDir)
  File "/home/mkoenig/git/tellurium/tellurium/sedml/tesedml.py", line 1697, in readSEDMLDocument
    cls.checkSEDMLDocument(doc)
  File "/home/mkoenig/git/tellurium/tellurium/sedml/tesedml.py", line 1620, in checkSEDMLDocument
    raise IOError(doc.getErrorLog().toString())
OSError: line 62: (10202 [Error]) The only permitted MathML 2.0 elements in SBML Level 2 are the following: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and . 
Reference: L3V1 Section 3.4.1

line 77: (10202 [Error]) The only permitted MathML 2.0 elements in SBML Level 2 are the following: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and . 
Reference: L3V1 Section 3.4.1
matthiaskoenig commented 6 years ago

tellurium issue, can be closed here.