add_data_parallel

[inti]

Hi, I realised you added the code to sample in parallel for the stickyHMM, great! I think the function for add_data_parallel may be missing from the HMM class on pyhsmm/models.py though.

cheers, Inti

---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
/home/inti/.local/lib/python2.7/site-packages/IPython/utils/py3compat.pyc in execfile(fname, *where)
    176             else:
    177                 filename = fname
--> 178             __builtin__.execfile(filename, *where)

/home/inti/My_Soft/cnv-hdp-hmm/cnv_calling_parallel.py in <module>()
    101 print "loading data in parallel"
    102 for data_id in parallel.alldata.keys():
--> 103     model.add_data_parallel(data_id)
    104 
    105 

AttributeError: 'StickyHMM' object has no attribute 'add_data_parallel'

[mattjj]

Thanks! Fixed in 0a34974. Pull master and give it a shot; let me know if anything acts weird. (Remember all the engines generally need to be restarted when the code changes.)

[inti]

thanks, now it works just fine