Pipeline for manipulating and processing of VCF files. Standardize outputs and downstream plotting for overview of relevant metrics and variant distribution.
Hi,
I am trying to use the tool but many of R dependencies were not able to get installed and showed errors. see below as an example
devtools::install_github('Mikata-Project/ggthemr')
Downloading GitHub repo Mikata-Project/ggthemr@HEAD
sh: 1: /usr/bin/gzip: not found
sh: 1: /bin/gtar: not found
sh: 1: /usr/bin/gzip: not found
sh: 1: /bin/gtar: not found
Error: Failed to install 'ggthemr' from GitHub:
error in running command
In addition: Warning messages:
1: In system(paste(TAR, "--version >", tf, "2>&1")) :
error in running command
2: In system(cmd) : error in running command
3: In utils::untar(tarfile, ...) :
‘/usr/bin/gzip -dc '/tmp/Rtmpei4ppJ/file51651357033c.tar.gz' | /bin/gtar -xf '-' -C '/tmp/Rtmpei4ppJ/remotes5165405565f1'’ returned error code 127
4: In system(paste(TAR, "--version >", tf, "2>&1")) :
error in running command
Hi, I am trying to use the tool but many of R dependencies were not able to get installed and showed errors. see below as an example
devtools::install_github('Mikata-Project/ggthemr') Downloading GitHub repo Mikata-Project/ggthemr@HEAD sh: 1: /usr/bin/gzip: not found sh: 1: /bin/gtar: not found sh: 1: /usr/bin/gzip: not found sh: 1: /bin/gtar: not found Error: Failed to install 'ggthemr' from GitHub: error in running command In addition: Warning messages: 1: In system(paste(TAR, "--version >", tf, "2>&1")) : error in running command 2: In system(cmd) : error in running command 3: In utils::untar(tarfile, ...) : ‘/usr/bin/gzip -dc '/tmp/Rtmpei4ppJ/file51651357033c.tar.gz' | /bin/gtar -xf '-' -C '/tmp/Rtmpei4ppJ/remotes5165405565f1'’ returned error code 127 4: In system(paste(TAR, "--version >", tf, "2>&1")) : error in running command