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maunei / bpipe

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Report is not generated in the specified output directory #91

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1. Consider a trivial pipeline called 'test.groovy':
hello = {
   exec """
      echo "Hello!"
   """
}
Bpipe.run {
   hello
}

2. Run: bpipe run -r -d output test.groovy
3. Run: ls
commandlog.txt  doc  output  test.groovy

What is the expected output? What do you see instead?
Since I specified the output directory 'output', I expected the 'doc/' folder 
to be a subfolder of 'output/', which is not the case.

What version of the product are you using? On what operating system?
Bpipe 0.9.8.5
Linux x86_64

I think this should be quite easy to fix, Simon.
Florent

Original issue reported on code.google.com by florent....@gmail.com on 17 Mar 2014 at 8:58