This code currently runs delly using a bam and reference genome as input.
The parallelization is currently not working, and the callsnpsByChrom steps could be moved to callsnpsMerge to simplify the pipeline. This would also remove the need to merge bcf / vcf files.
This code currently runs delly using a bam and reference genome as input.
The parallelization is currently not working, and the callsnpsByChrom steps could be moved to callsnpsMerge to simplify the pipeline. This would also remove the need to merge bcf / vcf files.