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mauranolab / mapping

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Color bigBed tracks by strand #266

Closed mattmaurano closed 2 years ago

mattmaurano commented 3 years ago

uses colorByStrand r,g,b r,g,b (set to blue forward / red reverse like BAM, etc.)

This should apply to any bigBed tracks with 6-8 columns (i.e. having a strand but not itemRgb)

Required new daler/trackhub -- see #264

andremrsantos commented 2 years ago

On MakeTrackhub.py this appear to affect only Genotypes (only bigBed 6+), is that right?

https://github.com/mauranolab/mapping/blob/c792f38cec915af9077f7ff8dcbbd303ce97eab3/dnase/trackhub/MakeTrackhub.py#L583

mattmaurano commented 2 years ago

Andre, I think you're right. No, Genotypes have manually set colors already. So I think this mainly applies to assembly tracks which don't go through MakeTracks.py or trackhub. I'll take this.