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maxentile / msm-learn

Learning how to learn Markov State Models of conformational dynamics
MIT License
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SFA vs. tICA #17

Open maxentile opened 9 years ago

maxentile commented 9 years ago

http://people.brandeis.edu/~berkes/data/papers/BlasBerkWisk_NeurComp2006.pdf

Linear SFA is formally equivalent to tICA with time-delay one.

maxentile commented 9 years ago

Section 5: can jointly diagonalize time-delayed correlation matrices with more than one time delay, yielding a more robust solution.

maxentile commented 9 years ago

SFA using deep neural nets: http://www.cv-foundation.org/openaccess/content_cvpr_2014/papers/Sun_DL-SFA_Deeply-Learned_Slow_2014_CVPR_paper.pdf