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maxentile / msm-learn

Learning how to learn Markov State Models of conformational dynamics
MIT License
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Energy landscapes #9

Open maxentile opened 9 years ago

maxentile commented 9 years ago

How can we inspect them? How are they structured in general?

How to inspect:

  1. Sampling -- Collect a large number of conformations
  2. Analytical -- Inspect simple models (e.g. Geometry of Random Fields book)

Previous work: "Dynamics of hierarchical folding on energy landscapes of hexapeptides" http://wws.weizmann.ac.il/sb/faculty_pages/Levy/sites/weizmann.ac.il.sb.faculty_pages.Levy/files/ma_jcp.pdf

maxentile commented 9 years ago

How much insight can generalize across different protein systems?

maxentile commented 9 years ago

Nice slides by David Wales: https://www.icts.res.in/media/uploads/Old_Talks_Lectures/Document/1267764052David-Wales-Jan7.pdf