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maxhodak / keras-molecules

Autoencoder network for learning a continuous representation of molecular structures.
MIT License
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Error: No object named table in the file #3

Closed paularindam closed 8 years ago

paularindam commented 8 years ago

Hi On running python preprocess.py data/dataset.h5 data/processed.h5

I get an error: no object named table in the file.

screenshot 2016-10-25 10 52 21
maxhodak commented 8 years ago

Did you create a valid HDF5 file at data/dataset.h5? Those are just placeholders in the README. If you don't have a dataset of your own, you can use the example one:

python preprocess.py data/smiles_50k.h5 data/processed.h5

maxhodak commented 8 years ago

This works for me so if the issue is just the file being nonexistent in your example above I'm going to close this. Feel free to reopen if I've misinterpreted the issue.