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maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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Following a standard scanpy pipeline errors on cbBuild (resolveOutDir) #170

Closed inodb closed 4 years ago

inodb commented 4 years ago

This command fails:

cbBuild -o ~/public_html/cb -p 8888

because of outDirs missing from the default configuration

See:

https://github.com/maximilianh/cellBrowser/blob/634dd61069fa608f502cdb373cc85a657d9c6972/src/cbPyLib/cellbrowser/cellbrowser.py#L4166-L4171

In that case confDirs is None and confDirs is not iterable

Quick fix is to check for None, will send PR

maximilianh commented 4 years ago

Oohhh! Nice ! Thanks !

On Tue 28 Apr 2020 at 17:28, Ino de Bruijn notifications@github.com wrote:

This command fails:

cbBuild -o ~/public_html/cb -p 8888

because of outDirs missing from the default configuration

See:

https://github.com/maximilianh/cellBrowser/blob/634dd61069fa608f502cdb373cc85a657d9c6972/src/cbPyLib/cellbrowser/cellbrowser.py#L4166-L4171

In that case confDirs is None and confDirs is not iterable

Quick fix is to check for None, will send PR

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