maximilianh
commented
4 years ago Sorry someone else just noticed the same problem. It requires a file ~/.cellbrowser.conf with a line outDirs={}
I should have fixed this but I was stuck with something else sorry!
On Mon 4 May 2020 at 21:02, modash notifications@github.com wrote:
Hi, I am trying to setup cellbrowser lcoally on my machine. When I run it on sample data 'mini' with the following command, ../../src/cbBuild -p 8888 -i cellbrowser.conf -o ~/public_html/cells/ it is throwing following error,
Traceback (most recent call last): File "../../src/cbBuild", line 9, in cellbrowser.cbBuildCli() File "../../src/cbPyLib/cellbrowser/cellbrowser.py", line 4414, in cbBuildCli build(confFnames, outDir, port, redo=options.redo) File "../../src/cbPyLib/cellbrowser/cellbrowser.py", line 4175, in build outDir = resolveOutDir(outDir) File "../../src/cbPyLib/cellbrowser/cellbrowser.py", line 4169, in resolveOutDir if outDir in confDirs: TypeError: argument of type 'NoneType' is not iterable
I am getting the same error on conda based installation, git clone and pip as well. Not only in my local machine, same error in server as well. I have also tried with different versions of python. When I tried set_trace(), it is showing confDir in line 4169 is 'None'. But when I run with -r (recursive) option, it is not showing any error but the output directory is empty. Can you please tell me whether am missing something or there is any issue in the script itself?
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modash
Hi, I am trying to setup cellbrowser lcoally on my machine. When I run it on sample data 'mini' with the following command,
../../src/cbBuild -p 8888 -i cellbrowser.conf -o ~/public_html/cells/it is throwing following error,I am getting the same error on conda based installation, git clone and pip as well. Not only in my local machine, same error in server as well. I have also tried with different versions of python. When I tried set_trace(), it is showing confDir in line 4169 is 'None'. But when I run with -r (recursive) option, it is not showing any error but the output directory is empty. Can you please tell me whether am missing something or there is any issue in the script itself?