Closed Gibbsdavidl closed 3 years ago
Did you try Edit - Find Cells ?
On Mon, Sep 28, 2020 at 10:11 PM David L Gibbs notifications@github.com wrote:
Is this possible? It's essentially making cell selections based on annotation set operations.
I want to select a set of cells within cluster A as background (param == 'X', cluster=='A'), and compare to the remaining cells within cluster A (param != 'X' and cluster =='A' or even param == 'Y').
Thanks!
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Oh wow! Thanks. That's just what I was looking for.
-dave
One suggestion is to have a 'is not equal to' selection for enumerated types.
I'm glad you asked. It's very hard to get an idea for me which features people find useful...
On Tue, Sep 29, 2020 at 12:59 AM David L Gibbs notifications@github.com wrote:
One suggestion is to have a 'is not equal to' selection for enumerated types.
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Actually, this would be super useful feature for me... so I'm going to reopen the issue. :-) Hope that's OK.
I have a cluster where cells are annotated with 4 categories (A,B,C,D) and if you want to select category A, it's pretty easy (select cells: cluster == 1, category == A). But if you want to compare A vs others, it's more difficult (cluster == 1, category != A).
Thanks! -dave
Isn’t there a “is not equal” operator ? Oh... did I forget to add that ???
On Tue 29 Sep 2020 at 20:23, David L Gibbs notifications@github.com wrote:
Actually, this would be super useful feature for me... so I'm going to reopen the issue. :-) Hope that's OK.
I have a cluster where cells are annotated with 4 categories (A,B,C,D) and if you want to select category A,
it's pretty easy (select cells: cluster == 1, category == A). But if you want to compare A vs others, it's
more difficult (cluster == 1, category != A).
Thanks!
-dave
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Oh, uh, yes. There is not an "is not equal" (!=) operator.
-dave
Oops, sorry. I've added it now, you can find it on the Github develop branch and also on cells-test.gi.ucsc.edu. Is this for your own cell browser installation? Or for a dataset on cells.ucsc.edu ?
Also, I'd love to understand better the use case: is this for comparing two non-clusters?
@matthewspeir since we've covered it here, not sure, but maybe we need an internal redmine ticket for it, too? I don't remember what our plan was for handling Github issues w/r to releases.
I believe this has made it into a release. Closing for now.
Is this possible? It's essentially making cell selections based on annotation set operations.
I want to select a set of cells within cluster A as background (param == 'X', cluster=='A'), and compare to the remaining cells within cluster A (param != 'X' and cluster =='A' or even param == 'Y').
Thanks!