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maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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Lasso tool or option to rotate UMAP #235

Open shaln opened 2 years ago

shaln commented 2 years ago

Hello,

I was wondering if there is a lasso tool available instead of the rectangular cell selection tool? Or perhaps an option to rotate the UMAP so the cells of interest could be more precisely selected?

maximilianh commented 2 years ago

Hi, Oh yeah, we definitely need a lasso tool, I completely agree. Are you a javascript (or another language) programmer by chance?

On Fri, Jan 14, 2022 at 9:30 PM shaln @.***> wrote:

Hello,

I was wondering if there is a lasso tool available instead of the rectangular cell selection tool? Or perhaps an option to rotate the UMAP so the cells of interest could be more precisely selected?

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shaln commented 2 years ago

Sorry, I'm afraid not! I'm biologist turned bioinformatician (only familiar with R) in dire need for a tool like the cellBrowser :)

maximilianh commented 2 years ago

I really also want a lasso, but unfortunately there are so many things to do, notably importaing more file formats (SingleCellExperiment), fixing the worst bugs with quick genes, improving the UI and the heatmap viewer...

The lasso tool is not super important, is it? Maybe we can suggest a quick workaround? Do you know that you can add to the current selection by holding the shift key? In this way you can do multiple rectangles that usually works OK for me.

On Mon, Jan 17, 2022 at 3:41 AM shaln @.***> wrote:

Sorry, I'm afraid not! I'm biologist turned bioinformatician (only familiar with R) in dire need for a tool like the cellBrowser :)

— Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/235#issuecomment-1014086146, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACL4TJKW4RDYMOAQSPMVF3UWN6UDANCNFSM5MAP6GCA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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