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maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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abstract.html do not working #254

Open yesonse opened 1 year ago

yesonse commented 1 year ago

Dear there,

I am using abstract.html for each dataset, found that it worked on a simple "abstract.html" that I wrote by myself, but never worked when I made a new "abstract.html" by using r markdown.

Could you help to take a look why my new abstract.html did not work? Here I attached the errors and the "desc.json" that included my new abstract.html.

Thanks

Robin

Screen Shot 2022-10-24 at 1 26 01 PM desc.json.gz

maximilianh commented 1 year ago

Hi, It looks like it's not including all the javascript files... can you point me to the URL of this installation? I'm sure there is something very obvious that's going wrong...

On Mon, Oct 24, 2022 at 10:39 PM yesonse @.***> wrote:

Dear there,

I am using abstract.html for each dataset, found that it worked on a simple "abstract.html" that I wrote by myself, but never worked when I made a new "abstract.html" by using r markdown.

Could you help to take a look why my new abstract.html did not work? Here I attached the errors and the "desc.json" that included my new abstract.html.

Thanks

Robin

[image: Screen Shot 2022-10-24 at 1 26 01 PM] https://user-images.githubusercontent.com/23563960/197622482-2f271661-c901-4d6d-a14b-104afad3b2c6.png desc.json.gz https://github.com/maximilianh/cellBrowser/files/9855209/desc.json.gz

— Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/254, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACL4TPJSDV7KBJUM5GAGUDWE3XXBANCNFSM6AAAAAARNKWVEE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

yesonse commented 1 year ago

I believed I updated my installation of cell browser in March 2022 using pip.

it seemed not compatible with the new abstract.html I made. The desc.json file attached showed what I want but always crashed the webpage after clicked.

The cell browser work well when the desc.json is missing (I just gzipped it).

Thanks.

Robin

maximilianh commented 1 year ago

There is no attachment. Did you forget the attachment?

Does this cell browser have a publicly available URL? I could then have a look directly myself.

maximilianh commented 1 year ago

Did you try to update your browser with

pip install cellbrowser --upgrade --pre ?

yesonse commented 1 year ago

No, it is not publicly available. The attachment is https://github.com/maximilianh/cellBrowser/files/9855209/desc.json.gz

Let me know if there is a simple way to fix it.

Thanks

Robin

yesonse commented 1 year ago

Thanks Maximilianh, Here I attached the abstract.html that is not not compatible with the cell browser. Let me know if there is a simple way to fix it.

Robin

On Wed, Oct 26, 2022 at 7:36 AM Maximilian Haeussler < @.***> wrote:

There is no attachment. Did you forget the attachment?

Does this cell browser have a publicly available URL? I could then have a look directly myself.

— Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/254#issuecomment-1292150877, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFTY5OEPUW2JSGCHUQINLT3WFE6WPANCNFSM6AAAAAARNKWVEE . You are receiving this because you authored the thread.Message ID: @.***>

maximilianh commented 1 year ago

Sorry now I cannot see the new abstract.html attachment… can you see it on GitHub ?

On Wed 26 Oct 2022 at 22:59, yesonse @.***> wrote:

Thanks Maximilianh, Here I attached the abstract.html that is not not compatible with the cell browser. Let me know if there is a simple way to fix it.

Robin

On Wed, Oct 26, 2022 at 7:36 AM Maximilian Haeussler < @.***> wrote:

There is no attachment. Did you forget the attachment?

Does this cell browser have a publicly available URL? I could then have a look directly myself.

— Reply to this email directly, view it on GitHub < https://github.com/maximilianh/cellBrowser/issues/254#issuecomment-1292150877 , or unsubscribe < https://github.com/notifications/unsubscribe-auth/AFTY5OEPUW2JSGCHUQINLT3WFE6WPANCNFSM6AAAAAARNKWVEE

. You are receiving this because you authored the thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/254#issuecomment-1292646185, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACL4TN4EG4EQUK5HRGKXQDWFGLUJANCNFSM6AAAAAARNKWVEE . You are receiving this because you commented.Message ID: @.***>

yesonse commented 1 year ago

Here it is. It seemed the github email attachment did not work. Thanks. abstract.html.gz