maximilianh
commented
3 months ago I pasted you error into a search engine and found this ticket: https://github.com/satijalab/seurat/issues/1388 Does this somehow help solve your problem? If so, I should probably document that and add something to our instructions...
On Tue, Apr 9, 2024 at 11:17 AM mscheperr @.***> wrote:
When running the commands to load the dataset below into seurat in R I get the following error: Error in [.data.frame(feature.names, , gene.column) : undefined columns selected
Has anyone else had this issue and how have you solved it?
Data set used: Cell Browser dataset ID: pre-postnatal-cortex/all/rna
Script used: require(Seurat) setwd("downloadDir") mat = Read10X(".") meta = read.table("meta.tsv", header=T, sep="\t", as.is=T, row.names=1) so <- CreateSeuratObject(counts = mat, project = "myProjectName", meta.data=meta)
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When running the commands to load the dataset below into seurat in R I get the following error: Error in
[.data.frame(feature.names, , gene.column) : undefined columns selectedHas anyone else had this issue and how have you solved it?
Data set used: Cell Browser dataset ID: pre-postnatal-cortex/all/rna
Script used: require(Seurat) setwd("downloadDir") mat = Read10X(".") meta = read.table("meta.tsv", header=T, sep="\t", as.is=T, row.names=1) so <- CreateSeuratObject(counts = mat, project = "myProjectName", meta.data=meta)