search

maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
104 stars 40 forks source link

No cluster markers in example #31

Closed Jeltje closed 5 years ago

Jeltje commented 5 years ago

When I load the example dataset, I can click on the named clusters ('OPC', say) and a new window opens up ('Cluster markers for OPC') but the gene list never fills. Is there something I should run separately to make that happen? And is there a server log? Nothing rolls on my screen after Point your internet browser(...)

maximilianh commented 5 years ago

Oh... that shouldn't happen... there should be a marker list... let me investigate...

On Mon, Sep 24, 2018 at 1:54 PM, Jeltje notifications@github.com wrote:

When I load the example dataset, I can click on the named clusters ('OPC', say) and a new window opens up ('Cluster markers for OPC') but the gene list never fills. Is there something I should run separately to make that happen? And is there a server log? Nothing rolls on my screen after Point your internet browser(...)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/31, or mute the thread https://github.com/notifications/unsubscribe-auth/AAS-Taj4P_wlOlSA0Z2WISyPV6C97NmJks5ueRxJgaJpZM4W3J53 .

maximilianh commented 5 years ago

Ha, I forgot to switch on the marker genes in the sample config! This should be fixed now. Can you do a git pull and try the same command again?

On Mon, Sep 24, 2018 at 2:04 PM, Maximilian Haeussler <maximilianh@gmail.com

wrote:

Oh... that shouldn't happen... there should be a marker list... let me investigate...

On Mon, Sep 24, 2018 at 1:54 PM, Jeltje notifications@github.com wrote:

When I load the example dataset, I can click on the named clusters ('OPC', say) and a new window opens up ('Cluster markers for OPC') but the gene list never fills. Is there something I should run separately to make that happen? And is there a server log? Nothing rolls on my screen after Point your internet browser(...)

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/maximilianh/cellBrowser/issues/31, or mute the thread https://github.com/notifications/unsubscribe-auth/AAS-Taj4P_wlOlSA0Z2WISyPV6C97NmJks5ueRxJgaJpZM4W3J53 .