rsync to hgwdev gets Connection refused

maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

https://github.com/ucscGenomeBrowser/cellBrowser/

GNU General Public License v3.0

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rsync to hgwdev gets Connection refused #34

Closed Jeltje closed 5 years ago

Jeltje commented 5 years ago

Following the README: rsync -Lavzp hgwdev.soe.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress

Results in

rsync: failed to connect to hgwdev.soe.ucsc.edu (128.114.198.32): Connection refused (111)
rsync error: error in socket IO (code 10) at clientserver.c(125) [Receiver=3.1.2]

maximilianh commented 5 years ago

wow! This is strange! Does it work with genome-test.gi.ucsc.edu ?

On Tue, Sep 25, 2018 at 7:06 PM, Jeltje notifications@github.com wrote:

Following the README: rsync -Lavzp hgwdev.soe.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress

Results in

rsync: failed to connect to hgwdev.soe.ucsc.edu (128.114.198.32): Connection refused (111) rsync error: error in socket IO (code 10) at clientserver.c(125) [Receiver=3.1.2]

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Jeltje commented 5 years ago

No, same error I tried this from a different location just to be sure.

maximilianh commented 5 years ago

The admins forgot to switch on hgwdev... I requested it now, but it may take 1-2 days to update...

maximilianh commented 5 years ago

The admins have fixed the rsync server.

On Sat, Sep 29, 2018 at 4:38 AM Maximilian Haeussler maximilianh@gmail.com wrote:

The admins forgot to switch on hgwdev... I requested it now, but it may take 1-2 days to update...

Jeltje commented 5 years ago

Great, but now I get a different error:

rsync -Lavzp hgwdev.soe.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress
receiving incremental file list
rsync: link_stat "/datasets/pbmc3k" (in cells) failed: No such file or directory (2)

maximilianh commented 5 years ago

fixed now, sorry, but this is related to #35, so hold off for a bit, until I've run the example myself again...

maximilianh commented 5 years ago

OK, I got the example to work! It's not optimal (see the README, it currently only exports the most variable genes, which may be what you want, or not, let me know if it's not).

Jeltje commented 5 years ago

Hmm not quite. The below is a rerun, the other files were all downloaded.

rsync -Lavzp genome-test.gi.ucsc.edu::cells/datasets/pbmc3k ./pbmc3k/ --progress 
receiving incremental file list
symlink has no referent: "/datasets/pbmc3k/cbScanpy" (in cells)