search

maximilianh / multiSub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
GNU General Public License v3.0
35 stars 2 forks source link

GISAID upload token #1

Closed schultzm closed 3 years ago

schultzm commented 3 years ago

Hi Max,

Regarding the upload token for GISAID. In the manual for the CLI uploader there is a test token.

Cheers,

maximilianh commented 3 years ago

Thanks! I didn't see this! I'll try it.

On Wed, Sep 1, 2021 at 2:39 AM Mark Schultz @.***> wrote:

Hi Max,

Regarding the upload token for GISAID. In the manual for the CLI uploader there is a test token.

Cheers,

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/maximilianh/multiSub/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACL4TPO626BERZ5XKUN2DTT7VY27ANCNFSM5DFIXUUA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

maximilianh commented 3 years ago

This is fixed now and the test upload works. I'm curious: how did you find my tool? Do you upload SARS-CoV-2 sequences to GISAID?