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maxplanck-ie / nanoporeReads_dataTransfer

A pipeline to transfer the Nanopore reads to end users
MIT License
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multiqc and Kraken (with unclassified reads) #126

Open thomasmanke opened 1 year ago

thomasmanke commented 1 year ago

If kraken*report contains samples with a line containing "unclassfied" reads and other samples containing no such line then multiqc will interpret the former as "kraken" and the latter as "bracken" output - this will result in two different sections and also screw the parsing of the multiqc_report.json

An example is here: 20230607_0958_P2-7085206e51685c-B_PAO92085_9bf914e7