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maxplanck-ie / nanoporeReads_dataTransfer

A pipeline to transfer the Nanopore reads to end users
MIT License
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porechop memory footprint #141

Closed WardDeb closed 4 months ago

WardDeb commented 10 months ago

porechop's memory footprint seems excorbitant: ~.6TB for 140M reads at μ 5kb. We can look for an alternative, or only parse the data partially (and omit generation of trimmed files, just a report).

caballero commented 4 months ago

avoided using a subsampled set for porechop report