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maxplanck-ie / nanoporeReads_dataTransfer

A pipeline to transfer the Nanopore reads to end users
MIT License
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incorrect top species in report #147

Closed caballero closed 2 months ago

caballero commented 7 months ago

Report creation is reporting an incorrect value for top_species: ['pct_top_one'], this is performed by src/npr/snakehelper.py in function scan_multiqc (https://github.com/maxplanck-ie/nanoporeReads_dataTransfer/blob/709e4b05baee1c1e5907e315289d2c553e7ee597/src/npr/snakehelper.py#L37) in Kraken parsing.

Check changes from previous multiqc reports and apply a better parsing.

caballero commented 2 months ago

solved in 2.1.0