Develop - Githubissues

maxplanck-ie / nanoporeReads_dataTransfer

A pipeline to transfer the Nanopore reads to end users

MIT License

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Develop #149

Closed caballero closed 4 months ago

caballero commented 6 months ago

This PR is for:

capture software versions from HTML or JSON
merge bam files if available
set smart triggers for basecall, align and modbed files
change modbam2bed to modkit
capture model used from report JSON
dorado align using Fastq instead of BAM as input
fix parsing of species in multiqc_data in final report