Open sunta3iouxos opened 1 month ago
Hi,
would you have a corresponding .err
log from cluster_logs
?
Best wishes,
Katarzyna
I faced the same issue. Using multiqc1.23 solved my issue. Unfortunately dont have the error detail anymore, but it simply couldnt detect any of generated text files as a multiqc compatible file.
Alright, so an env update is needed :+1:
@katsikora if I am not mistaken multiqc in order to work properly needs a different conda environment than some of the programs used in a standard bioinformatics analysis. I do not know if this was an issue with a specific version. I solved this issue by isolating multiqc from a main conda environment.
this is this is the error code when reaching the multifastq, this is the same pipeline as #1021
I removed some entries to make it readable. take note the version of my snakePipes