Open LeilyR opened 1 month ago
Hey Leily,
thanks for sharing this . Could you tell me more about it? This rule is 'just' doing simple bash operations on a couple of files. I would think it should work in any bash setting. What kind of issues did you encounter?
Best wishes,
Katarzyna
PS Nice to see you back here ;)
to be precise:
genomecov=`bc -l <<< "$peak_len/$genome_size"`
(standard_in) 1: syntax error
and that is because the number looks like this: "445/5,75996e+11"
both "e" and "," are the problem.
MACS2_peak_qc requires certain locale setting otherwise fails. Just to let you know if you want to add it in the shell script or somewhere.