no snakePipes v3.0.0 with "conda create -n snakePipes -c mpi-ie -c conda-forge -c bioconda snakePipes"

[sunta3iouxos]

Hi all, I wonder if I am missing something. I try to install the latest snakePiupes version, that should have been the 3.0.0 but I only get the 2.8.1 My conda environment is the following:

 active environment : base
    active env location : /home/tgeorgom/miniforge3
            shell level : 1
       user config file : /home/tgeorgom/.condarc
 populated config files : /home/tgeorgom/miniforge3/.condarc
                          /home/tgeorgom/.condarc
          **conda version : 24.7.1**
    conda-build version : not installed
         **python version : 3.10.14.final.0**
                 solver : libmamba (default)
       virtual packages : __archspec=1=nehalem
                          __conda=24.7.1=0
                          __glibc=2.17=0
                          __linux=3.10.0=0
                          __unix=0=0
       base environment : /home/tgeorgom/miniforge3  (writable)
      conda av data dir : /home/tgeorgom/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /scratch/tgeorgom/pkgs
       envs directories : /scratch/tgeorgom/mamba
                          /home/tgeorgom/miniforge3/envs
                          /home/tgeorgom/.conda/envs
               platform : linux-64
             user-agent : conda/24.7.1 requests/2.31.0 CPython/3.10.14 Linux/3.10.0-1160.76.1.el7.x86_64 centos/7.9.2009 glibc/2.17 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.8
                UID:GID : 226309:666
             netrc file : None
           offline mode : False

I tried to install the last snakePipes version with conda create -n snakePipes -c mpi-ie -c conda-forge -c bioconda snakePipes and I am not receiving the desired version:

 snakemake-7.18.2           |       hdfd78af_1           8 KB  bioconda
    snakemake-minimal-7.18.2   |     pyhdfd78af_1         248 KB  bioconda
    snakepipes-2.8.0           |             py_0        13.2 MB  mpi-ie

Am I missing something?

[katsikora]

Thanks for reporting the issue, I've pushed the packaged to conda. Can you try again? It should work now.

Best wishes,

Katarzyna

[sunta3iouxos]

it appears to be fine now, although there are many more snakemake plugins, I assume this is the normal now.

snakemake-8.20.4           |       hdfd78af_0           9 KB  bioconda
    snakemake-executor-plugin-cluster-generic-1.0.9|     pyhdfd78af_0          14 KB  bioconda
    snakemake-interface-common-1.17.3|     pyhdfd78af_0          18 KB  bioconda
    snakemake-interface-executor-plugins-9.2.0|     pyhdfd78af_0          22 KB  bioconda
    snakemake-interface-report-plugins-1.0.0|     pyhdfd78af_0          13 KB  bioconda
    snakemake-interface-storage-plugins-3.3.0|     pyhdfd78af_0          18 KB  bioconda
    snakemake-minimal-8.20.4   |     pyhdfd78af_0         804 KB  bioconda
    snakepipes-3.0.0           |             py_0         188 KB  mpi-ie